Here are reported my last 5-years publications. A more complete list can be found in HAL.


  1. : How is it used?
    Minh-Hoang Dang, Alban Gaignard, Hala Skaf-Molli, and 1 more author
    In International Semantic Web Conference (ISWC) 2023, Nov 2023
  2. FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards
    Alban Gaignard, Thomas Rosnet, Frédéric Lamotte, and 2 more authors
    Journal of Biomedical Semantics, Dec 2023
  3. Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems
    Marine Djaffardjy, George Marchment, Clémence Sebe, and 5 more authors
    Computational and Structural Biotechnology Journal, Dec 2023
  4. Extraction d’informations sur les workflows scientifiques à partir de la littérature
    Clémence Sebe, Aurélie Névéol, Sarah Cohen-Boulakia, and 1 more author
    In 23ème conférence francophone sur l’Extraction et la Gestion des Connaissances (EGC), Jan 2023


  1. A taxonomy of tools and approaches for distributed genomic analyses
    Wilmer Garzón, Luis Benavides, Alban Gaignard, and 2 more authors
    Informatics in Medicine Unlocked, Jan 2022


  1. Large-scale regulatory and signaling network assembly through linked open data
    Marie Lefebvre, Alban Gaignard, Maxime Folschette, and 2 more authors
    Database: The Journal of Biological Databases and Curation, Jan 2021
  2. Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development
    Rafael Ferreira Silva, Henri Casanova, Kyle Chard, and 55 more authors
    ArXiv, Jan 2021
  3. Découvrabilité et réutilisation de données produites par des workflows : un cas d’usage en génomique
    Alban Gaignard, Hala Skaf-Molli, and Khalid Belhajjame
    In Journées Francophones d’Ingénierie des Connaissances, Jan 2021


  1. Findable and reusable workflow data products: A genomic workflow case study
    Alban Gaignard, Hala Skaf-Molli, and Khalid Belhajjame
    Semantic Web, Jan 2020
  2. Location of intracranial aneurysms is the main factor associated with rupture in the ICAN population
    Olivia Rousseau, Matilde Karakachoff, Alban Gaignard, and 15 more authors
    Journal of Neurology, Neurosurgery, and Psychiatry, Jan 2020
  3. Prediction of Unruptured Intracranial Aneurysm Evolution: The UCAN Project.
    Vincent L’Allinec, Stéphanie Chatel, Matilde Karakachoff, and 12 more authors
    Neurosurgery, Jan 2020
  4. EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020)
    Matú\vs Kala\vs, Hervé Ménager, Alban Gaignard, and 3 more authors
    F1000Research, Jan 2020
  5. Characterization of 3D bifurcations in micro-scan and MRA-TOF images of cerebral vasculature for prediction of intra-cranial aneurysms
    Anass Nouri, Florent Autrusseau, Romain Bourcier, and 7 more authors
    Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society, Jan 2020


  1. INEX-MED: INtegration and EXploration of heterogeneous bio-MEDical data
    Alban Gaignard, Julie Dawn Thompson, Kirsley Chennen, and 5 more authors
    In , Jan 2019
  2. EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (2019 update)
    Matú\vs Kala\vs, Laure Plantard, Natasa Sladoje, and 23 more authors
    F1000Research, Jan 2019
  3. On Distributed Collaboration for Biomedical Analyses
    Fatima-Zahra Boujdad, Alban Gaignard, Mario Südholt, and 3 more authors
    2019 19th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), Jan 2019
  4. 3D bifurcations characterization for intra-cranial aneurysms prediction
    Anass Nouri, Florent Autrusseau, Romain Bourcier, and 7 more authors
    In Medical Imaging: Image Processing, Jan 2019
  5. INEX-MED: a Knowledge Graph to explore and link heterogeneous bio-medical data
    Maxime Folschette, Kirsley Chennen, Alban Gaignard, and 5 more authors
    In , Jan 2019